University of Heidelberg
BIOQUANT

KNIME Image Processing (KNIP)

German BioImaging :: Image Analysis
 

Data Analysis

Data Analysis
Data Pipeline

 

We provide tools for automated high-throughput data processing in accordance with the open source data pipeline for HCS - based on the integrative software platform KNIME. The platform enables to integrate, share and process HCS data • up to entire Screening Pipelines • using a workflow-oriented architecture which can be used by (non-) experts.

 

 

Within the Workflow Repository we so far provide solutions for:

 

  • Experiment MetaData  → Handling of libraries, plate layouts, etc.
  • Image Processing
  • Statistics
  • Microscope FeedBack  → Target / Hit  (re-) localisation on and between arbitrary microscopy platforms

 

 

For data processing and analysis a large number of integrations is available. For a simplified overview, see:

KNIME integrations

The overview also specifies integrations which are provided by BioQuant / RNAi Screening Facility - they can be downloaded as additional internal plugins.

 

» Contact / Further information: rnaiscreening (at) bioquant.uni-heidelberg.de

 

 

Contact: E-Mail (Last update: 16/08/2016)